BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00330.1

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925479 jgi|Araly1|925479|scaffold_201040.1                        555    8e-158
  Ahg925533 jgi|Araly1|925533|scaffold_201094.1                        531    1e-150


> Ahg925479 jgi|Araly1|925479|scaffold_201040.1
Length=496

 Score =  555 bits (300),  Expect = 8e-158
 Identities = 302/303 (99%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGaaaaaaaaTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGAAAAAAAATAT  153

Query  61   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  213

Query  121  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  273

Query  181  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  333

Query  241  CACATCCTTCGGGAAATGGTTCAGGCATGTTTGTTGCCAGGGGCAACAAGATCAAGCTGG  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  334  CACATCCTTCGGGAAATGGTTCAGGCTTGTTTGTTGCCAGGGGCAACAAGATCAAGCTGG  393

Query  301  TAA  303
            |||
Sbjct  394  TAA  396


> Ahg925533 jgi|Araly1|925533|scaffold_201094.1
Length=350

 Score =  531 bits (287),  Expect = 1e-150
 Identities = 295/299 (99%), Gaps = 0/299 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGaaaaaaaaTAT  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGGCAAAGAAAATTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGAAAAAAAATAT  81

Query  61   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAA  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  82   CATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTTCGTCGCTAAGTGAGAAA  141

Query  121  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCAT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  142  TGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACATCTTCAT  201

Query  181  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  CGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGA  261

Query  241  CACATCCTTCGGGAAATGGTTCAGGCATGTTTGTTGCCAGGGGCAACAAGATCAAGCTG  299
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  262  CACATCCTTCGGGAAATGGTTCAGGCTTGTTTGTTGCCAGGGGCAACAAGATCAAGCTG  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10645409331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5