BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00360.1

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907879 jgi|Araly1|907879|Al_scaffold_0002_960                     699    0.0   
  Ahg925535 jgi|Araly1|925535|scaffold_201096.1                        422    1e-117


> Ahg907879 jgi|Araly1|907879|Al_scaffold_0002_960
Length=507

 Score =  699 bits (378),  Expect = 0.0
 Identities = 380/381 (99%), Gaps = 0/381 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  186

Query  61   CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  187  CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  246

Query  121  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  306

Query  181  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGTGGAGAACAG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  307  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGCGGAGAACAG  366

Query  241  GCCATTCAACAAGGAGATTCTGAAATGGCGGAGGCTTGGTTCGCTCAAGCCGCTGAGTAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  GCCATTCAACAAGGAGATTCTGAAATGGCGGAGGCTTGGTTCGCTCAAGCCGCTGAGTAT  426

Query  301  TGGAAACAGGCTATAACGCTTACTCCTGGTAATTATATTGAAGCACAGAATTGGTTGACG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  TGGAAACAGGCTATAACGCTTACTCCTGGTAATTATATTGAAGCACAGAATTGGTTGACG  486

Query  361  ATCACGAGGCGCTTCGAATAA  381
            |||||||||||||||||||||
Sbjct  487  ATCACGAGGCGCTTCGAATAA  507


> Ahg925535 jgi|Araly1|925535|scaffold_201096.1
Length=289

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 231/232 (99%), Gaps = 1/232 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  80

Query  61   CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  140

Query  121  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  200

Query  181  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGTG  232
            |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  201  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTAC-GTG  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13621545273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5