BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00380.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925475 jgi|Araly1|925475|scaffold_201036.1 1109 0.0
Ahg925537 jgi|Araly1|925537|scaffold_201098.1 1103 0.0
> Ahg925475 jgi|Araly1|925475|scaffold_201036.1
Length=1236
Score = 1109 bits (600), Expect = 0.0
Identities = 604/606 (99%), Gaps = 0/606 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGTTACCGAGGGCCTCGTTTTaaaaaaaTACGCCGTCTGGGGGCTTTACCGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATGTCACGTTACCGAGGGCCTCGTTTTAAAAAAATACGCCGTCTGGGGGCTTTACCGGGA 655
Query 61 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTAAAA 715
Query 121 aaaTCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 775
Query 181 ACAGAACACCAATTACTTAAATATGTGCGTATAGCCGGAAAAGCCAAGGGGTCAACAGGT 240
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 ACAGAACGCCAATTACTTAAATATGTGCGTATCGCCGGAAAAGCCAAGGGGTCAACAGGT 835
Query 241 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 895
Query 301 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 955
Query 361 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 1015
Query 421 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 1075
Query 481 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 1135
Query 541 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 1195
Query 601 ACTTAA 606
||||||
Sbjct 1196 ACTTAA 1201
> Ahg925537 jgi|Araly1|925537|scaffold_201098.1
Length=646
Score = 1103 bits (597), Expect = 0.0
Identities = 603/606 (99%), Gaps = 0/606 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGTTACCGAGGGCCTCGTTTTaaaaaaaTACGCCGTCTGGGGGCTTTACCGGGA 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCACGTTACCGAGGGCCTCGTCTTAAAAAAATACGCCGTCTGGGGGCTTTACCGGGA 80
Query 61 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTAAAA 140
Query 121 aaaTCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTT 200
Query 181 ACAGAACACCAATTACTTAAATATGTGCGTATAGCCGGAAAAGCCAAGGGGTCAACAGGT 240
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 201 ACAGAACGCCAATTACTTAAATATGTGCGTATCGCCGGAAAAGCCAAGGGGTCAACAGGT 260
Query 241 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATG 320
Query 301 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGT 380
Query 361 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGAT 440
Query 421 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTG 500
Query 481 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGAT 560
Query 541 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAG 620
Query 601 ACTTAA 606
||||||
Sbjct 621 ACTTAA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5