BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00400.1

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925538 jgi|Araly1|925538|scaffold_201099.1                       69.4    3e-12


> Ahg925538 jgi|Araly1|925538|scaffold_201099.1
Length=281

 Score = 69.4 bits (37),  Expect = 3e-12
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Minus

Query  1    GGGGATATGGCGGAATTGGTAGACGCTACGGACTTAA  37
            |||||||||||||||||||||||||||||||||||||
Sbjct  104  GGGGATATGGCGGAATTGGTAGACGCTACGGACTTAA  68



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2407918779


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5