BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00470.1
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475565 jgi|Araly1|475565|fgenesh2_kg.2__695__ATCG00470.1 719 0.0
Ahg925505 jgi|Araly1|925505|scaffold_201066.1 614 2e-175
Ahg475600 jgi|Araly1|475600|fgenesh2_kg.2__730__ATCG00470.1 403 4e-112
> Ahg475565 jgi|Araly1|475565|fgenesh2_kg.2__695__ATCG00470.1
Length=398
Score = 719 bits (389), Expect = 0.0
Identities = 395/398 (99%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 1 ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA 60
Query 61 GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACGCGCCGATT 120
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACGCGCCGATT 120
Query 121 GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGTTAACGATG 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGTTAACGATG 180
Query 181 GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT 240
Query 241 GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA 300
Query 301 GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA 360
Query 361 CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398
||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398
> Ahg925505 jgi|Araly1|925505|scaffold_201066.1
Length=1867
Score = 614 bits (332), Expect = 2e-175
Identities = 342/347 (99%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 53 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACG 112
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1501 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACG 1560
Query 113 CGCCGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGT 172
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1561 CGCTGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGT 1620
Query 173 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAG 232
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1621 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATAACTATTTTAG 1680
Query 233 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 1740
Query 293 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 1800
Query 353 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 399
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 1847
> Ahg475600 jgi|Araly1|475600|fgenesh2_kg.2__730__ATCG00470.1
Length=221
Score = 403 bits (218), Expect = 4e-112
Identities = 220/221 (99%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 178 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 60
Query 238 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 120
Query 298 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 180
Query 358 AGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398
| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14308345875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5