BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00510.1

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925545 jgi|Araly1|925545|scaffold_201106.1                        211    7e-55


> Ahg925545 jgi|Araly1|925545|scaffold_201106.1
Length=220

 Score =  211 bits (114),  Expect = 7e-55
 Identities = 114/114 (100%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  1    ATGACAACTTTCAATAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCCTAGTCTTTCCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  87   ATGACAACTTTCAATAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCCTAGTCTTTCCG  146

Query  61   GCAATTGCAATGGCTTCTTTATTTCTTCATATTCaaaaaaaTAAGATTTTTTAG  114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  GCAATTGCAATGGCTTCTTTATTTCTTCATATTCAAAAAAATAAGATTTTTTAG  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3516325836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5