BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00520.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475605 jgi|Araly1|475605|fgenesh2_kg.2__735__ATCG00520.1 1007 0.0
Ahg907872 jgi|Araly1|907872|Al_scaffold_0002_953 998 0.0
> Ahg475605 jgi|Araly1|475605|fgenesh2_kg.2__735__ATCG00520.1
Length=554
Score = 1007 bits (545), Expect = 0.0
Identities = 551/554 (99%), Gaps = 0/554 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT 60
Query 61 AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT 120
Query 121 TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCAtttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCATTTTTTTT 180
Query 181 CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG 240
Query 241 TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATGATCTTTTCGACCGAAAAGAAGGA 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATTATCTTTTCGACCGAAAAGAAGGA 300
Query 301 ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC 360
Query 361 TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCCCGGCGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 361 TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCTCGACGT 420
Query 421 GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT 480
Query 481 TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA 540
Query 541 ATTGAAGTATTTTG 554
||||||||||||||
Sbjct 541 ATTGAAGTATTTTG 554
> Ahg907872 jgi|Araly1|907872|Al_scaffold_0002_953
Length=549
Score = 998 bits (540), Expect = 0.0
Identities = 544/546 (99%), Gaps = 0/546 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT 60
Query 61 AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT 120
Query 121 TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCAtttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCATTTTTTTT 180
Query 181 CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG 240
Query 241 TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATGATCTTTTCGACCGAAAAGAAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATGATCTTTTCGACCGAAAAGAAGGA 300
Query 301 ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC 360
Query 361 TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCCCGGCGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 361 TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCTCGACGT 420
Query 421 GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT 480
Query 481 TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA 540
Query 541 ATTGAA 546
||||||
Sbjct 541 ATTGAA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5