BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00530.1

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315511 jgi|Araly1|315511|fgenesh1_pm.C_scaffold_2000544          1064    0.0  
  Ahg315554 jgi|Araly1|315554|fgenesh1_pm.C_scaffold_2000587           309    2e-83


> Ahg315511 jgi|Araly1|315511|fgenesh1_pm.C_scaffold_2000544
Length=648

 Score = 1064 bits (576),  Expect = 0.0
 Identities = 593/601 (99%), Gaps = 1/601 (0%)
 Strand=Plus/Plus

Query  90   TTTGAAAACTTGGATTACTAATTGGTGGAATACTAGACAATGCGAAACTTTTTTGAATGA  149
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49   TTTG-AAACTTGGATTACTAATTGGTGGAATACTAGACAATGCGAAACTTTTTTGAATGA  107

Query  150  TATTCAAGAAAAAAGTTTTCTAGAAAAATTCATACAATTAGAGGAACTATTCCAGCTCGA  209
            |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  108  TATTCAAGAAAAAAGTGTTCTAGAAAAATTCATACAATTAGAAGAACTATTCCAGCTCGA  167

Query  210  TGAAATGATAAAGGAATACCCAGAAACCAATTTACAACAATTTCGTCTAGGAATCCACAA  269
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  168  TGAAATGATAAAGGAATACCCAGAAACCGATTTACAACAATTTCGTCTAGGAATCCACAA  227

Query  270  AGAAACGATCCAATTCATCAAGATACACAATGAGTATAATATCCATACAATCTTGCACTT  329
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  228  AGAAACGATCCAATTCATCAAGATACACAATGAGTATCGTATCCATACAATCTTGCACTT  287

Query  330  CTCGACAAATCTAATATCTTTCGTTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAA  389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  CTCGACAAATCTAATATCTTTCGTTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAA  347

Query  390  GCTTTTTATTCTGAATTCTTGGGTTCAAGAATTCCTATATAATTTAAGTGATACAATTAA  449
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  348  GCTTTTTATTCTGAATTCGTGGGTTCAAGAATTCCTATATAATTTAAGTGATACAATTAA  407

Query  450  AGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTCGCCTCACGGTTG  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  408  AGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTCGCCTCACGGTTG  467

Query  510  GGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTATGAGCAAATTTT  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  468  GGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTATGAGCAAATTTT  527

Query  570  ATCTGGTCTAGTTTCTACCTTTCCAGTAATTCTTGATACAATTTTTAAATATTGGATTTT  629
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  528  ATCTGGTCTAGTTTCTACCTTTCCAGTCATTCTTGATACAATTTTTAAATATTGGATTTT  587

Query  630  TCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATGCAATAAACGACTA  689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  TCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATGCAATAAACGACTA  647

Query  690  A  690
            |
Sbjct  648  A  648


> Ahg315554 jgi|Araly1|315554|fgenesh1_pm.C_scaffold_2000587
Length=501

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 173/176 (98%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  233  AAACCAATTTACAACAATTTCGTCTAGGAATCCACAAAGAAACGATCCAATTCATCAAGA  292
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  AAACCGATTTACAACAATTTCGTCTAGGAATCCACAAAGAAACGATCCAATTCATCAAGA  223

Query  293  TACACAATGAGTATAATATCCATACAATCTTGCACTTCTCGACAAATCTAATATCTTTCG  352
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  TACACAATGAGTATCGTATCCATACAATCTTGCACTTCTCGACAAATCTAATATCTTTCG  283

Query  353  TTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAAGCTTTTTATTCTGAATTCT  408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  TTATTCTAAGTGGTTATTCCTTTTGGGGTAAGGAAAAGCTTTTTATTCTGAATTCT  339


 Score =  285 bits (154),  Expect = 3e-76
 Identities = 161/164 (98%), Gaps = 2/164 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAAAAAGAAAGCATTCATTCCttttttttATTTT-CTATCTATAGTCTTTTTGCC  59
            |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct  1    ATGGCAAAAAAGAAAGCATTGATTCCTTTTTTTTATTTTAC-ATCTATAGTCTTTTTGCC  59

Query  60   CTGGTTGATCTCTCTCTGCTGTAATAAAAGTTTGAAAACTTGGATTACTAATTGGTGGAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   CTGGTTGATCTCTCTCTGCTGTAATAAAAGTTTGAAAACTTGGATTACTAATTGGTGGAA  119

Query  120  TACTAGACAATGCGAAACTTTTTTGAATGATATTCAAGAAAAAA  163
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TACTAGACAATGCGAAACTTTTTTGAATGATATTCAAGAAAAAA  163


 Score =  248 bits (134),  Expect = 4e-65
 Identities = 136/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  438  TGATACAATTAAAGCTTTTTCGATTCTTTTATTAACTGATTTATGTATCGGATTCCATTC  497
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  339  TGATACAATTAAAGCTTTTTCGATTATTTTATTAACTGATTTATGTATCGGATTCCATTC  398

Query  498  GCCTCACGGTTGGGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTA  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  GCCTCACGGTTGGGAACTAATGATTGGTTATATTTACAAAGATTTTGGGTTTGCTCATTA  458

Query  558  TGAGCAAATTTTATCTG  574
            |||||||||||||||||
Sbjct  459  TGAGCAAATTTTATCTG  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25351739805


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5