BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00540.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475560 jgi|Araly1|475560|fgenesh2_kg.2__690__ATCG00540.1 1685 0.0
Ahg475606 jgi|Araly1|475606|fgenesh2_kg.2__736__ATCG00540.1 893 0.0
> Ahg475560 jgi|Araly1|475560|fgenesh2_kg.2__690__ATCG00540.1
Length=954
Score = 1685 bits (912), Expect = 0.0
Identities = 941/955 (99%), Gaps = 1/955 (0%)
Strand=Plus/Plus
Query 1 ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
Query 61 TCACTCATAATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTCATGATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
Query 121 CAGCAGAATTATGAAAATCCACGAGAGGCGACTGGGCGTATTGTATGTGCCAATTGCCAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAGCAGAATTATGAAAATCCACGAGAGGCAACTGGGCGTATTGTATGTGCCAATTGCCAT 180
Query 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
Query 241 GAAGCAGTTGTTAAAATTCCTTATGATATGCAACTAAAACAAGTTCTAGCTAATGGTAAA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCAGTTATTAAAATTCCTTATGATATGCAACTAAAACAAGTTCTAGCTAATGGTAAA 300
Query 301 AAAGGGGCTTTGAATGTGGGAGCTGTTCTTATTTTACCGGAGGGTTTTGAATTAGccccc 360
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAAGGAGCTTTGAATGTGGGAGCTGTTCTTATTTTACCGGAGGGGTTTGAATTAGCCCCC 360
Query 361 cccGATCGTATTTCACCCGAGATGAAAGAAAAGATAGGAAATCTTTCTTTTCAGAATTAT 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CCCGATCGTATTTCACCCGAGATGAAAGAAAAGATAGGAAATCTGGCTTTTCAGAATTAT 420
Query 421 CGTCCCAATaaaaaaaaTATTCTTGTGATAGGTCCTGTTCCTGGTCAAAAATATAGTGAA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCCCCAATAAAAAAAATATTCTTGTGATAGGTCCTGTTCCTGGTCAAAAATATAGTGAA 480
Query 481 ATAACCTTTCCTATTCTTGCTCCAGACCCTGCTACTAATAAAGATGTTCACTTCTTAAAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAACCTTTCCTATTCTTGCTCCGGACCCTGCTACTAATAAAGATGTTCACTTCTTAAAA 540
Query 541 TATCCTATATATGTAGGTGGAAACAGGGGAAGGGGTCAGATTTATCCTGATGGTAGCAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCCTATATATGTAGGTGGAAACAGGGGAAGGGGTCAGATTTATCCTGATGGTAGCAAA 600
Query 601 AGTAACAATACAGTTTATAATGCTACGGCAGGAGGGATAATAAGTAAAATTTTACGAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTAACAATACAGTTTATAATGCTACGGCAGGAGGGATAATAAGTAAAATTTTACGAAAA 660
Query 661 GAAAAGGGGGGATACGAAATAACCATAGTGGATGCATCGAATGGACGCGAAGTTATTGAT 720
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 661 GAAAAAGGGGGATACGAAATAACCATAGTGGATGCATCAAATGGACGCGAAGTGATTGAT 720
Query 721 ATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAGGGCGAATCCATTAAACTCGATCAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAGGGCGAATCCATTAAACTCGATCAA 780
Query 781 CCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTT 840
Query 841 CAAGATCCATTACGTGTCCAAGGTCTTTTGTTCTTCTTAGGATCGGTTGTTTTGGCACAA 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTCTTAGGATCGGTTGTTTTGGCACAA 900
Query 901 ATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGTTCAATTATCCGAAATGA 955
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 ATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGT-CAATTATCCGAAATGA 954
> Ahg475606 jgi|Araly1|475606|fgenesh2_kg.2__736__ATCG00540.1
Length=810
Score = 893 bits (483), Expect = 0.0
Identities = 499/507 (98%), Gaps = 0/507 (0%)
Strand=Plus/Plus
Query 457 GTTCCTGGTCAAAAATATAGTGAAATAACCTTTCCTATTCTTGCTCCAGACCCTGCTACT 516
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 304 GTTCCTGGTCAAAAATATAGTGAAATAACCTTTCCTATTCTTGCTCCGGACCCTGCTACT 363
Query 517 AATAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGTGGAAACAGGGGAAGGGGT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AATAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGTGGAAACAGGGGAAGGGGT 423
Query 577 CAGATTTATCCTGATGGTAGCAAAAGTAACAATACAGTTTATAATGCTACGGCAGGAGGG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CAGATTTATCCTGATGGTAGCAAAAGTAACAATACAGTTTATAATGCTACGGCAGGAGGG 483
Query 637 ATAATAAGTAAAATTTTACGAAAAGAAAAGGGGGGATACGAAATAACCATAGTGGATGCA 696
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 ATAATAAGTAAAATTTTACGAAAAGAAAAAGGGGGATACGAAATAACCATAGTGGATGCA 543
Query 697 TCGAATGGACGCGAAGTTATTGATATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAG 756
|| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TCAAATGGACGCAAAGTGATTGATATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAG 603
Query 757 GGCGAATCCATTAAACTCGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGT 816
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 604 GGCGAATCCATTAAACTCGAGCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGT 663
Query 817 CAGGGGGATGCGGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGTCTTTTGTTCTTC 876
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 664 CAGGGAGATGCGGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTC 723
Query 877 TTAGGATCGGTTGTTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTAGGATCGGTTGTTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAG 783
Query 937 GTTCAATTATCCGAAATGAATTTTTAG 963
|||||||||||||||||||||||||||
Sbjct 784 GTTCAATTATCCGAAATGAATTTTTAG 810
Score = 433 bits (234), Expect = 1e-120
Identities = 242/246 (98%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAACTATAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
Query 61 TCACTCATAATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTCATGATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
Query 121 CAGCAGAATTATGAAAATCCACGAGAGGCGACTGGGCGTATTGTATGTGCCAATTGCCAT 180
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CACCAGAATTATGAAAATCCACGAGAGGCAACTGGGCGTATTGTATGTGCCAATTGCCAT 180
Query 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
Query 241 GAAGCA 246
||||||
Sbjct 241 GAAGCA 246
Score = 111 bits (60), Expect = 7e-24
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 190 AAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTTGAAGCAGTT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTTGAAGCAGTT 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5