BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00550.1

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925462 jgi|Araly1|925462|scaffold_201023.1                        215    6e-56


> Ahg925462 jgi|Araly1|925462|scaffold_201023.1
Length=420

 Score =  215 bits (116),  Expect = 6e-56
 Identities = 121/123 (98%), Gaps = 1/123 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGATACTACTGGAAGGATTCCTCTTTGGGTAATAGGTACTGTAGCTGGTATTCTT  60
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  163  ATGGCTGATACTACTGGAAGGA-TCCTCTTTGGGTAATAGGTACTGTAGCTGGTATTCCT  221

Query  61   GTGATCGGTTTAATAGGTATTTTCTTTTATGGTTCATATTCAGGATTAGGTTCATCCCTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GTGATCGGTTTAATAGGTATTTTCTTTTATGGTTCATATTCAGGATTAGGTTCATCCCTG  281

Query  121  TAG  123
            |||
Sbjct  282  TAG  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3860314233


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5