BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00580.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925461 jgi|Araly1|925461|scaffold_201022.1 460 2e-129
Ahg925548 jgi|Araly1|925548|scaffold_201109.1 435 9e-122
> Ahg925461 jgi|Araly1|925461|scaffold_201022.1
Length=906
Score = 460 bits (249), Expect = 2e-129
Identities = 251/252 (99%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 602
Query 61 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 662
Query 121 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 722
Query 181 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTAGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 723 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGACGAATTTAGT 782
Query 241 AGATCTTTTTAG 252
||||||||||||
Sbjct 783 AGATCTTTTTAG 794
> Ahg925548 jgi|Araly1|925548|scaffold_201109.1
Length=451
Score = 435 bits (235), Expect = 9e-122
Identities = 237/238 (99%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGG 80
Query 61 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GTCATTCATAGCATTACTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACC 140
Query 121 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GGTTTAGCTTACGATGTGTTCGGGAGCCCTCGTCCAAACGAGTATTTTACAGAGAGCCGA 200
Query 181 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTA 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 201 CAAGGCATTCCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGACGAATTTA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5