BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00640.1
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925457 jgi|Araly1|925457|scaffold_201018.1 361 1e-99
Ahg925551 jgi|Araly1|925551|scaffold_201112.1 350 3e-96
Ahg937101 jgi|Araly1|937101|scaffold_501292.1 134 3e-31
> Ahg925457 jgi|Araly1|925457|scaffold_201018.1
Length=243
Score = 361 bits (195), Expect = 1e-99
Identities = 199/201 (99%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 82
Query 61 AATGATATTAAGAAAGAAGCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AATGATATTAAGAAAGAATCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 142
Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 202
Query 181 CACGGGGAAATCAAGAAATAG 201
||| |||||||||||||||||
Sbjct 203 CACTGGGAAATCAAGAAATAG 223
> Ahg925551 jgi|Araly1|925551|scaffold_201112.1
Length=243
Score = 350 bits (189), Expect = 3e-96
Identities = 197/201 (98%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 60
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 23 ATGGCCAAGGGTAAAGATGTTCGAGTAAGAATTATTTTGGAATGTACTAGTTGTGTTCGA 82
Query 61 AATGATATTAAGAAAGAAGCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 120
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 83 AATGATATTAAGAAAGAATCCGCGGGAATTTCCAGATATATTACTCAAAAAAATCGGCAT 142
Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 202
Query 181 CACGGGGAAATCAAGAAATAG 201
|||||||||||||||||||||
Sbjct 203 CACGGGGAAATCAAGAAATAG 223
> Ahg937101 jgi|Araly1|937101|scaffold_501292.1
Length=305
Score = 134 bits (72), Expect = 3e-31
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 114 AACACCCCTAGTCGATTGGAATTGAAAAAATTCTGTCCATATTGTTGTAAACATACAATT 173
Query 181 CACGGGGAAATCAAGAAATAG 201
|||||||||||||||||||||
Sbjct 174 CACGGGGAAATCAAGAAATAG 194
Score = 115 bits (62), Expect = 1e-25
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGGTAAAGATGTT-CGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCG 59
|||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 21 ATGGCCAA-GGTAAAGATGTTAAGAGTAACAATTATTTTGGAATGTACCAGTAGTTTTCG 79
Query 60 AAATGATATTAAGAAAGAAGCCGCGGGAAT 89
|||| |||||||||||| | | ||||||||
Sbjct 80 AAATTATATTAAGAAAGCATCGGCGGGAAT 109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6797510458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5