BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00650.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925456 jgi|Araly1|925456|scaffold_201017.1 549 4e-156
Ahg925552 jgi|Araly1|925552|scaffold_201113.1 532 4e-151
> Ahg925456 jgi|Araly1|925456|scaffold_201017.1
Length=394
Score = 549 bits (297), Expect = 4e-156
Identities = 303/306 (99%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1 ATGAATAAATCTAAGCGACTTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAATAAATCTAAGCGACTTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC 80
Query 61 CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT 140
Query 121 AGTGAACAAGGAAAAATATTATCTAGACGGGTGAATAGAGTGACTTTAAAACAACAACGA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 AGTGAACAAGGAAAAATATTATCTAGGCGGGTGAATAGAGTGACTTTAAAACAACAACGA 200
Query 181 TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT 260
Query 241 CAGAAACAATTTGAAAGAAGTGAGTCGACTCCTAGAACTACTAGTCTTAGAACCAGaaaa 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 261 CAGAAACAATTTGAAAGAAGTGAGTCGACCCCTAGAACTACTAGCCTTAGAACCAGAAAA 320
Query 301 aaaTAG 306
||||||
Sbjct 321 AAATAG 326
> Ahg925552 jgi|Araly1|925552|scaffold_201113.1
Length=346
Score = 532 bits (288), Expect = 4e-151
Identities = 300/306 (98%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1 ATGAATAAATCTAAGCGACTTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAATAAATCTAAGCGAATTTTTACTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCC 80
Query 61 CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATT 140
Query 121 AGTGAACAAGGAAAAATATTATCTAGACGGGTGAATAGAGTGACTTTAAAACAACAACGA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 AGTGAACAAGGAAAAATATTATCTAGGCGGGTGAATAGAGTGACTTTAAAACAACAACGA 200
Query 181 TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTAATCACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAAT 260
Query 241 CAGAAACAATTTGAAAGAAGTGAGTCGACTCCTAGAACTACTAGTCTTAGAACCAGaaaa 300
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 261 CATAAACAATTTGAAAGAAGTGAGTCGACCCCTAGAACTACTAGCCTTAGAACCATAAAA 320
Query 301 aaaTAG 306
||||||
Sbjct 321 AAATAG 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5