BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00660.1
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925553 jgi|Araly1|925553|scaffold_201114.1 638 0.0
Ahg925455 jgi|Araly1|925455|scaffold_201016.1 638 0.0
> Ahg925553 jgi|Araly1|925553|scaffold_201114.1
Length=397
Score = 638 bits (345), Expect = 0.0
Identities = 351/354 (99%), Gaps = 0/354 (0%)
Strand=Plus/Plus
Query 1 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 82
Query 61 GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 83 GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA 142
Query 121 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 202
Query 181 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 203 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA 262
Query 241 TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 322
Query 301 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA 376
> Ahg925455 jgi|Araly1|925455|scaffold_201016.1
Length=455
Score = 638 bits (345), Expect = 0.0
Identities = 351/354 (99%), Gaps = 0/354 (0%)
Strand=Plus/Plus
Query 1 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 82
Query 61 GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 83 GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA 142
Query 121 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 202
Query 181 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 203 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA 262
Query 241 TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 322
Query 301 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12591344370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5