BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00700.1

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947809 jgi|Araly1|947809|scaffold_704038.1                        243    3e-64


> Ahg947809 jgi|Araly1|947809|scaffold_704038.1
Length=333

 Score =  243 bits (131),  Expect = 3e-64
 Identities = 131/131 (100%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAACAGCAACCCTAGTCGCCATCTTTATATCTGGGTTACTTGTAAGTTTTACTGGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  110  ATGGAAACAGCAACCCTAGTCGCCATCTTTATATCTGGGTTACTTGTAAGTTTTACTGGG  169

Query  61   TATGCTCTATATACTGCCTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  TATGCTCTATATACTGCCTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAA  229

Query  121  CACGGGGACTA  131
            |||||||||||
Sbjct  230  CACGGGGACTA  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4162520449


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5