BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00710.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475609 jgi|Araly1|475609|fgenesh2_kg.2__739__ATCG00710.1          399    3e-111
  Ahg475557 jgi|Araly1|475557|fgenesh2_kg.2__687__ATCG00710.1          399    3e-111


> Ahg475609 jgi|Araly1|475609|fgenesh2_kg.2__739__ATCG00710.1
Length=222

 Score =  399 bits (216),  Expect = 3e-111
 Identities = 220/222 (99%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTACACAAACTGTTGAGGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG  60

Query  61   AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCCGGATGGGGAACGACC  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCTGGATGGGGAACGACC  120

Query  121  CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT  180

Query  181  TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG  222
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG  222


> Ahg475557 jgi|Araly1|475557|fgenesh2_kg.2__687__ATCG00710.1
Length=222

 Score =  399 bits (216),  Expect = 3e-111
 Identities = 220/222 (99%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTACACAAACTGTTGAGGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG  60

Query  61   AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCCGGATGGGGAACGACC  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCTGGATGGGGAACGACC  120

Query  121  CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT  180

Query  181  TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG  222
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5