BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00720.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907863 jgi|Araly1|907863|Al_scaffold_0002_944 1168 0.0
Ahg925557 jgi|Araly1|925557|scaffold_201118.1 933 0.0
> Ahg907863 jgi|Araly1|907863|Al_scaffold_0002_944
Length=729
Score = 1168 bits (632), Expect = 0.0
Identities = 639/642 (99%), Gaps = 1/642 (0%)
Strand=Plus/Plus
Query 7 AAAGTTTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCAGATGATATAACT 66
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 89 AAA-TTTATGATTGGTTCGAAGAACGCCTTGAGATTCAGGCGATTGCAGATGATATAACT 147
Query 67 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 207
Query 127 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 267
Query 187 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 327
Query 247 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 387
Query 307 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 447
Query 367 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 507
Query 427 ATTGGTTATTGGGCGGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 486
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 567
Query 487 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 627
Query 547 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 687
Query 607 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 648
||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 729
> Ahg925557 jgi|Araly1|925557|scaffold_201118.1
Length=622
Score = 933 bits (505), Expect = 0.0
Identities = 517/523 (99%), Gaps = 0/523 (0%)
Strand=Plus/Plus
Query 11 TTTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCAGATGATATAACTAGTA 70
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 100 TTTATGATTGGTTCGAAGAACGCCTTGAGATTCAGGCGATTGCAGATGATATAACTAGTA 159
Query 71 AATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACTTGTT 130
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 AATATGTTCCTCCACATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACTTGTT 219
Query 131 TTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTTACTG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTTACTG 279
Query 191 AAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATCCGAT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 AAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATCCGAT 339
Query 251 CAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTTCGTG 310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 CAGTTCATCGATGGTTGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTTCGTG 399
Query 311 TATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTC 459
Query 371 TGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTG 519
Query 431 GTTATTGGGCGGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCAC 490
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GTTATTGGGCAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCAC 579
Query 491 CTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATC 533
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 580 CTCTTGTAGAATTATTACGTTGAAGTGCTAGTGTTGGACAATC 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5