BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00730.1
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1 837 0.0
Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1 837 0.0
> Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1
Length=459
Score = 837 bits (453), Expect = 0.0
Identities = 457/459 (99%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 25 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 60
Query 85 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT 144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT 120
Query 145 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 180
Query 205 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 240
Query 265 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 300
Query 325 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 360
Query 385 GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 444
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 420
Query 445 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 483
|||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 459
> Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1
Length=459
Score = 837 bits (453), Expect = 0.0
Identities = 457/459 (99%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 25 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 60
Query 85 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT 144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT 120
Query 145 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 180
Query 205 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 240
Query 265 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 300
Query 325 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 360
Query 385 GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 444
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 420
Query 445 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 483
|||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17513415351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5