BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00780.1
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925443 jgi|Araly1|925443|scaffold_201004.1 671 0.0
Ahg925563 jgi|Araly1|925563|scaffold_201124.1 665 0.0
Ahg924405 jgi|Araly1|924405|scaffold_105686.1 660 0.0
> Ahg925443 jgi|Araly1|925443|scaffold_201004.1
Length=419
Score = 671 bits (363), Expect = 0.0
Identities = 367/369 (99%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 1 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTAGAGAATTGATG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATG 80
Query 61 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 140
Query 121 GCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 200
Query 181 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGGACGATAATACGATATGAT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAATAATGGGACGATAATACGATATGAT 260
Query 241 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 320
Query 301 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG 380
Query 361 GTATTATAA 369
|||||||||
Sbjct 381 GTATTATAA 389
> Ahg925563 jgi|Araly1|925563|scaffold_201124.1
Length=409
Score = 665 bits (360), Expect = 0.0
Identities = 366/369 (99%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 1 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTAGAGAATTGATG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATG 80
Query 61 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 140
Query 121 GCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GTTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 200
Query 181 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGGACGATAATACGATATGAT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAATAATGGGACGATAATACGATATGAT 260
Query 241 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 320
Query 301 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG 380
Query 361 GTATTATAA 369
|||||||||
Sbjct 381 GTATTATAA 389
> Ahg924405 jgi|Araly1|924405|scaffold_105686.1
Length=409
Score = 660 bits (357), Expect = 0.0
Identities = 365/369 (99%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 1 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTAGAGAATTGATG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21 ATGATTCAACCACAAACCTATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATG 80
Query 61 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TGTATTCGAATAATAGGAGCTAGTAATCGCCGATATGCTCATATTGGTGACGTTATTGTT 140
Query 121 GCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCTGTAATCAAAGAAGCAATACCAAATACTCCTCTAGAAAGATCAGAAGTGATTAGAGCT 200
Query 181 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGGACGATAATACGATATGAT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 GTAATTGTACGTACTTGTAAAGAACTCAAACGTAATAATGGGACGATAATACGATATGAT 260
Query 241 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GACAATGCCGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGG 320
Query 301 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGTTTCATTAGCTCCTGAG 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 321 GCGATCCCACGGGAATTGAGACAATTAAACTTTACTAAAATAGCTTCATTAGCTCCTGAG 380
Query 361 GTATTATAA 369
|||||||||
Sbjct 381 GTATTATAA 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13163678205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5