BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00790.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263 737 0.0
Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938 737 0.0
Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304 438 1e-122
Ahg475616 jgi|Araly1|475616|fgenesh2_kg.2__746__ATCG00790.1 420 4e-117
Ahg936802 jgi|Araly1|936802|scaffold_500993.1 320 5e-87
> Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263
Length=408
Score = 737 bits (399), Expect = 0.0
Identities = 405/408 (99%), Gaps = 0/408 (0%)
Strand=Plus/Plus
Query 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
Query 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
Query 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGT 180
Query 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
Query 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
Query 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATA 360
Query 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
> Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938
Length=408
Score = 737 bits (399), Expect = 0.0
Identities = 405/408 (99%), Gaps = 0/408 (0%)
Strand=Plus/Plus
Query 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60
Query 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120
Query 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGT 180
Query 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240
Query 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300
Query 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATA 360
Query 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408
> Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304
Length=873
Score = 438 bits (237), Expect = 1e-122
Identities = 345/396 (87%), Gaps = 12/396 (3%)
Strand=Plus/Plus
Query 15 AAGAACCAGA-TTTC-GTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGTGGG 72
||||| || | |||| | ||||| |||||||||||| | |||||||||||| ||| |||
Sbjct 486 AAGAA-CAAAGTTTCAG-AAACATCATCGAGGAAGAATTAAAGGAATATCTACTCAAGGG 543
Query 73 AATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACATCT 132
|| || | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AA---TA--T-TTTTGGTAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACATCT 597
Query 133 AGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAAATT 192
||||||||||||||||||||||| ||||||||||||||| || |||||||| |||| ||
Sbjct 598 AGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATATAGGACGTGGTTTAAAAGTT 657
Query 193 TGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACGCGTATGGGT 252
| || | ||||||| ||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 658 CGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCCCCCGAAACGCGAATGGGT 717
Query 253 TC-TGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGTAAAATCCTTTA 311
| |||||||||| || | || ||||||||||||||||||||||||||||||| ||||
Sbjct 718 -CGTGGGAAAGGAGATCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAAAATCATTTA 776
Query 312 TGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATAGCGGCATCAAA 371
|||||||||||||||| ||||||| ||||| ||| |||||||| |||| |||||||||||
Sbjct 777 TGAAATGGGTGGTGTATCCGAAAAAATAGCCAGAGAAGCTATTACAATTGCGGCATCAAA 836
Query 372 AATGCCTATAAAAACCCAATTCATTATTTCTGAATA 407
| |||||||||||||| |||||||||||| ||||||
Sbjct 837 ATTGCCTATAAAAACCAAATTCATTATTTTTGAATA 872
> Ahg475616 jgi|Araly1|475616|fgenesh2_kg.2__746__ATCG00790.1
Length=248
Score = 420 bits (227), Expect = 4e-117
Identities = 243/250 (97%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 160 ATGACACGAAATGTACGACGTGGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCA 219
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACACGAAATGTACGACGTGGTGAAAAAATTTGGGTACGTATATTTCCAGACAAACCA 60
Query 220 GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGG 279
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGG 120
Query 280 GTAGCTGTGGTTAAACCAGGTAAAATCCTTTATGA-AATGGGTGGTGTACCCGAAAATAT 338
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 GTAGCTGTGGCTAAACCAGGTAAAATCCTTTAT-ATAATGGGTGGTGTACCCGAAAATAT 179
Query 339 AGCAAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACCCAATTCATTAT 398
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 AGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACC-AATTCATTAT 238
Query 399 TTCTGAATAG 408
||||||||||
Sbjct 239 TTCTGAATAG 248
> Ahg936802 jgi|Araly1|936802|scaffold_500993.1
Length=704
Score = 320 bits (173), Expect = 5e-87
Identities = 179/182 (98%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 10 CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT 582
Query 70 GGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACA 129
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 583 GGGAATCATATTTGTTTTGGCAGATATGCTCGTCAAACACTTGAACCCGCTTGGATCACA 642
Query 130 TCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAA 189
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 643 TCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGTGGAAAA 702
Query 190 AT 191
||
Sbjct 703 AT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5