BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00820.1
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912921 jgi|Araly1|912921|Al_scaffold_0001_3175 261 2e-69
Ahg907854 jgi|Araly1|907854|Al_scaffold_0002_935 261 2e-69
Ahg946681 jgi|Araly1|946681|scaffold_702910.1 241 2e-63
> Ahg912921 jgi|Araly1|912921|Al_scaffold_0001_3175
Length=150
Score = 261 bits (141), Expect = 2e-69
Identities = 147/150 (98%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 130 ATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATA 189
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGATTGGCCATACTATCGCTATTCATAATGGAAGGGAACACCTACCCGTTTATATAATA 60
Query 190 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 120
Query 250 GCCAAAAATGATAATAGATCTCGTCGTTAA 279
|| |||||||||||||||||||||||||||
Sbjct 121 GCGAAAAATGATAATAGATCTCGTCGTTAA 150
> Ahg907854 jgi|Araly1|907854|Al_scaffold_0002_935
Length=150
Score = 261 bits (141), Expect = 2e-69
Identities = 147/150 (98%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 130 ATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATA 189
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGATTGGCCATACTATCGCTATTCATAATGGAAGGGAACACCTACCCGTTTATATAATA 60
Query 190 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 120
Query 250 GCCAAAAATGATAATAGATCTCGTCGTTAA 279
|| |||||||||||||||||||||||||||
Sbjct 121 GCGAAAAATGATAATAGATCTCGTCGTTAA 150
> Ahg946681 jgi|Araly1|946681|scaffold_702910.1
Length=267
Score = 241 bits (130), Expect = 2e-63
Identities = 137/140 (98%), Gaps = 1/140 (1%)
Strand=Plus/Minus
Query 6 ACGTTCACTaaaaaaaaaCCCTTTTGTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCT 65
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGTTCACTAAAAAAACA-CCTTTTGTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCT 182
Query 66 TAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCCACCATTATACC 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCCACCATTATACC 122
Query 126 CACAATGATTGGCCATACGA 145
|||||||||||||||| |||
Sbjct 121 CACAATGATTGGCCATGCGA 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9729675195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5