BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00900.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952685 jgi|Araly1|952685|scaffold_900036.1 865 0.0
Ahg925576 jgi|Araly1|925576|scaffold_201137.1 865 0.0
Ahg922803 jgi|Araly1|922803|scaffold_104084.1 865 0.0
Ahg947169 jgi|Araly1|947169|scaffold_703398.1 859 0.0
> Ahg952685 jgi|Araly1|952685|scaffold_900036.1
Length=1560
Score = 865 bits (468), Expect = 0.0
Identities = 468/468 (100%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 1023
Query 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 1083
Query 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 1143
Query 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 1203
Query 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 1263
Query 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 1323
Query 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 1383
Query 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 1431
> Ahg925576 jgi|Araly1|925576|scaffold_201137.1
Length=617
Score = 865 bits (468), Expect = 0.0
Identities = 468/468 (100%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 80
Query 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 140
Query 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 200
Query 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 260
Query 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 320
Query 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 380
Query 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 440
Query 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 488
> Ahg922803 jgi|Araly1|922803|scaffold_104084.1
Length=814
Score = 865 bits (468), Expect = 0.0
Identities = 468/468 (100%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 270
Query 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 330
Query 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 390
Query 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 450
Query 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 510
Query 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 570
Query 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 630
Query 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 678
> Ahg947169 jgi|Araly1|947169|scaffold_703398.1
Length=508
Score = 859 bits (465), Expect = 0.0
Identities = 467/468 (99%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAAT 80
Query 61 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGaaaaaaaTCATTGGCTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTAT 140
Query 121 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCT 200
Query 181 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTA 260
Query 241 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCC 320
Query 301 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 321 ATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCAAAATATGGCTTTCAAATTA 380
Query 361 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAG 440
Query 421 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5