BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00940.1

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952676 jgi|Araly1|952676|scaffold_900027.1                       71.3    7e-13
  Ahg915223 jgi|Araly1|915223|Al_scaffold_0009_192                    71.3    7e-13


> Ahg952676 jgi|Araly1|952676|scaffold_900027.1
Length=10497

 Score = 71.3 bits (38),  Expect = 7e-13
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Minus

Query  1     GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  38
             ||||||||||||||||||||||||||||||||||||||
Sbjct  8988  GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  8951


 Score = 65.8 bits (35),  Expect = 3e-11
 Identities = 35/35 (100%), Gaps = 0/35 (0%)
 Strand=Plus/Minus

Query  39    GGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCA  73
             |||||||||||||||||||||||||||||||||||
Sbjct  8149  GGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCA  8115


> Ahg915223 jgi|Araly1|915223|Al_scaffold_0009_192
Length=204

 Score = 71.3 bits (38),  Expect = 7e-13
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  1    GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  38
            ||||||||||||||||||||||||||||||||||||||
Sbjct  73   GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  110



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 1949267583


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5