BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01020.1

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952677 jgi|Araly1|952677|scaffold_900028.1                        289    5e-78


> Ahg952677 jgi|Araly1|952677|scaffold_900028.1
Length=277

 Score =  289 bits (156),  Expect = 5e-78
 Identities = 158/159 (99%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAGTTCCaaaaaaaCGTACTTCTATCTCGAAAAAGCGTATTCGTaaaaaaaTTTGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   ATGGCAGTTCCAAAAAAACGTACTTCTATCTCGAAAAAGCGTATTCGTAAAAAAATTTGG  132

Query  61   AAAAGGAAGGGATATTGGACATCGTTGAAAGCTTTTTCATTAGGGAAATCACTTTCTACA  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  133  AAAAGGAAGGGATATTGGACATCGTTGAAAGCTTTTTCGTTAGGGAAATCACTTTCTACA  192

Query  121  GGTAATTCAAAAAGtttttttGTACAGCAAAATAAATAA  159
            |||||||||||||||||||||||||||||||||||||||
Sbjct  193  GGTAATTCAAAAAGTTTTTTTGTACAGCAAAATAAATAA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5193603496


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5