BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG01060.1 Length=246 Score E Sequences producing significant alignments: (Bits) Value Ahg497133 jgi|Araly1|497133|fgenesh2_kg.9__98__ATCG01060.1 298 1e-80 > Ahg497133 jgi|Araly1|497133|fgenesh2_kg.9__98__ATCG01060.1 Length=164 Score = 298 bits (161), Expect = 1e-80 Identities = 163/164 (99%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 82 ATGATACCTTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCTCCAAGAACCGAGGAC 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATACCTTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCTCCAAGAACCGAGGAC 60 Query 142 TGTGTTGGTTGTAAGAGATGTGAATCCGCCTGTCCAACGGATTTTTTGAGCGTTCGAGTT 201 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTGTTGGTTGTAAAAGATGTGAATCCGCCTGTCCAACGGATTTTTTGAGCGTTCGAGTT 120 Query 202 TATTTATGGCATGAAACAACTCGAAGTATGGGTCTAGCTTATTG 245 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATTTATGGCATGAAACAACTCGAAGTATGGGTCTAGCTTATTG 164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8515982203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5