BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01060.1

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497133 jgi|Araly1|497133|fgenesh2_kg.9__98__ATCG01060.1           298    1e-80


> Ahg497133 jgi|Araly1|497133|fgenesh2_kg.9__98__ATCG01060.1
Length=164

 Score =  298 bits (161),  Expect = 1e-80
 Identities = 163/164 (99%), Gaps = 0/164 (0%)
 Strand=Plus/Plus

Query  82   ATGATACCTTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCTCCAAGAACCGAGGAC  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATACCTTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCTCCAAGAACCGAGGAC  60

Query  142  TGTGTTGGTTGTAAGAGATGTGAATCCGCCTGTCCAACGGATTTTTTGAGCGTTCGAGTT  201
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGTGTTGGTTGTAAAAGATGTGAATCCGCCTGTCCAACGGATTTTTTGAGCGTTCGAGTT  120

Query  202  TATTTATGGCATGAAACAACTCGAAGTATGGGTCTAGCTTATTG  245
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATTTATGGCATGAAACAACTCGAAGTATGGGTCTAGCTTATTG  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8515982203


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5