BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01070.1

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952680 jgi|Araly1|952680|scaffold_900031.1                        555    8e-158


> Ahg952680 jgi|Araly1|952680|scaffold_900031.1
Length=618

 Score =  555 bits (300),  Expect = 8e-158
 Identities = 304/306 (99%), Gaps = 0/306 (0%)
 Strand=Plus/Plus

Query  1    ATGATACTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTTGATTGGTCTTTATGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  131  ATGATACTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTTGATTGGTCTTTATGGA  190

Query  61   TTGATCACAAGTCGAAATATGGTTAGGGCTCTTATGTGTCTTGAACTTATACTCAATGCA  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  TTGATCACGAGTCGAAATATGGTTAGGGCTCTTATGTGTCTTGAACTTATACTCAATGCA  250

Query  121  GTTAATATGAATTTCGTAACATTTTCTGAtttttttGATAATTCCCAACTAAAAGGGGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  251  GTTAATATGAATTTCGTAACATTTTCTGATTTTTTTGATAATTCCCAACTAAAAGGGGAA  310

Query  181  ATTTTCTGCATTTTTGTTATAGCAATTGCAGCCGCTGAAGCAGCTATTGGATTAGCTATA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  ATTTTCTGCATTTTTGTTATAGCAATTGCAGCCGCTGAAGCAGCTATTGGATTAGCTATA  370

Query  241  GTCTCGTCAATTTATCGTAACAGAAAATCAATTCGCATAAACCAATCGACCTTATTAAAT  300
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  371  GTCTCGTCAATTTATCGTAACAGAAAATCAACTCGCATAAACCAATCGACCTTATTAAAT  430

Query  301  AAGTAA  306
            ||||||
Sbjct  431  AAGTAA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10759876098


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5