BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01080.1

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952681 jgi|Araly1|952681|scaffold_900032.1                        965    0.0  


> Ahg952681 jgi|Araly1|952681|scaffold_900032.1
Length=641

 Score =  965 bits (522),  Expect = 0.0
 Identities = 528/531 (99%), Gaps = 0/531 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTA  80

Query  61   GTAGGGGGTCTGGGAGTGGTATTACTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA  120
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  81   GTAGGAGGTCTGGGAGTGGTATTCCTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGA  140

Query  121  TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  TTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCT  200

Query  181  GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  GCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTC  260

Query  241  ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCATTGGGAATGGGATTACT  300
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  261  ATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCGTTGGGAATGGGATTACT  320

Query  301  TCGTTGGTTTGTACAACTATTCtttttttATTAATGTCTACTATTCTCGATACGTCATGG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  TCGTTGGTTTGTACAACTATTCTTTTTTTATTAATGTCTACTATTCTCGATACGTCATGG  380

Query  361  TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  TACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAAT  440

Query  421  AGTCAACAAATAGGAATTCATTTATCAACAGAtttttttCTGCCATTTGAACTCATTTCA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  441  AGTCAACAAATAGGAATTCATTTATCAACAGATTTTTTTCTGCCATTTGAACTCATTTCA  500

Query  481  ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA  531
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  ATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19344883623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5