BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01090.1

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333070 jgi|Araly1|333070|fgenesh1_pm.C_scaffold_9000098           953    0.0  


> Ahg333070 jgi|Araly1|333070|fgenesh1_pm.C_scaffold_9000098
Length=519

 Score =  953 bits (516),  Expect = 0.0
 Identities = 518/519 (99%), Gaps = 0/519 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTCCTATGATAACCGGGTTCATGAATTATGGTCAACAAACCCTACGAGCTGCAAGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCTTCCTATGATAACCGGGTTCATGAATTATGGTCAACAAACCCTACGAGCTGCAAGG  60

Query  61   TATATTGGTCAAGGTTTCATGATTACCTTATCCCACACAAATCGTTTACCTGTAACTATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATATTGGTCAAGGTTTCATGATTACCTTATCCCACACAAATCGTTTACCTGTAACTATT  120

Query  121  CAATATCCCTATGAAAAATTAATAACATCGGAACGTTTCCGCGGTCGAATCCATTTTGAA  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  CAATATCCCTATGAAAAATTAATAACATCGGAACGTTTCCGTGGTCGAATCCATTTTGAA  180

Query  181  TTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTATAGATTTGCCTGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTATAGATTTGCCTGTT  240

Query  241  GTTGATTGGAAATTGGAAACTAATATTCGaaaaaaaCGATTGCTTAATTACAGTATTGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTTGATTGGAAATTGGAAACTAATATTCGAAAAAAACGATTGCTTAATTACAGTATTGAT  300

Query  301  TTTGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCAACAAATTGTTTGTCA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCAACAAATTGTTTGTCA  360

Query  361  ATGACTGAAGAATATGAATTTTCCACTTATGATCGTCACGAATTGAATTATAATCAAATA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ATGACTGAAGAATATGAATTTTCCACTTATGATCGTCACGAATTGAATTATAATCAAATA  420

Query  421  GCTTTGGGTCGTTTACCAATGTCAGTAATTGACGATTACACTATTCGAACAATTTGGAAT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GCTTTGGGTCGTTTACCAATGTCAGTAATTGACGATTACACTATTCGAACAATTTGGAAT  480

Query  481  TCACCTCAAACAAAAAATGGGGTAAACCCTTTAATTTGA  519
            |||||||||||||||||||||||||||||||||||||||
Sbjct  481  TCACCTCAAACAAAAAATGGGGTAAACCCTTTAATTTGA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18887016555


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5