BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG01120.1
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915218 jgi|Araly1|915218|Al_scaffold_0009_187 472 8e-133
> Ahg915218 jgi|Araly1|915218|Al_scaffold_0009_187
Length=267
Score = 472 bits (255), Expect = 8e-133
Identities = 263/267 (99%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 1 ATGATAAAAAATATAGTCATTTCATTTGAAGAACAAAAAGAAGAAAGCAGGGGATCCGTT 60
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGATAAAAAATACATTCATTTCATTTGAAGAACAAAAAGAAGAAAGCAGGGGATCTGTT 60
Query 61 GAATTTCAAGTATTTAGTTTCACTAATAAGATACGAAGACTTACTTCACATTTGGAATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAATTTCAAGTATTTAGTTTCACTAATAAGATACGAAGACTTACTTCACATTTAGAATTG 120
Query 121 CACAGAAAAGATTATTTATCTCAGCGGGGTCTACGAAAAATTCTGGGAAAACGTCAACGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACAGAAAAGATTATTTATCTCAGCGGGGTCTACGAAAAATTCTGGGAAAACGTCAACGA 180
Query 181 CTGCTGGCTTATTTGTCaaaaaaaaaTAGAGTACGTTATAAAGAATTAATTAATCAGTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGCTGGCTTATTTGTCAAAAAAAAATAGAGTACGTTATAAAGAATTAATTAATCAGTTG 240
Query 241 AATATTCGGGAATTAAAAACTCGTTAA 267
|||||||||||||||||||||||||||
Sbjct 241 AATATTCGGGAATTAAAAACTCGTTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9317935684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5