BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG01260.1

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925574 jgi|Araly1|925574|scaffold_201135.1                        150    1e-36


> Ahg925574 jgi|Araly1|925574|scaffold_201135.1
Length=254

 Score =  150 bits (81),  Expect = 1e-36
 Identities = 81/81 (100%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  1   GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  7   GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAG  66

Query  61  GTTCGAGTCCTCTTCAAGGCA  81
           |||||||||||||||||||||
Sbjct  67  GTTCGAGTCCTCTTCAAGGCA  87



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2255035047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5