BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00080.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936826 jgi|Araly1|936826|scaffold_501017.1                        614    3e-175


> Ahg936826 jgi|Araly1|936826|scaffold_501017.1
Length=1049

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 344/350 (98%), Gaps = 0/350 (0%)
 Strand=Plus/Plus

Query  1    ATGTATTTAACCATAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCT  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  136  ATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCT  195

Query  61   CAGGTGTCAAAGTGTGGATTTCATATAGTCaaaaaaaaGGGAGACGTGCTATATCCGAAA  120
            ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  196  CAGGTGTCAAAGTATGGATTTCATATAGTCAAAAAAAAGGGGGACGTGCTATATCCGAAA  255

Query  121  CGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGATGGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  CGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGATGGT  315

Query  181  ACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTAAAGCTGGTCGTCTTTCATAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  316  ACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTAAAGCTGGTCGTCTTTCATAT  375

Query  241  CGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACACTTTCATCGTGCTATGAGCGGA  300
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  376  CGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACACTTACATCGTGCTATGAGCGGA  435

Query  301  CAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTCCC  350
            |||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  436  CAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGAATCCCCC  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5