BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATMG00090.1 Length=1671 Score E Sequences producing significant alignments: (Bits) Value Ahg936826 jgi|Araly1|936826|scaffold_501017.1 291 2e-77 Ahg940863 jgi|Araly1|940863|scaffold_601407.1 71.3 2e-11 > Ahg936826 jgi|Araly1|936826|scaffold_501017.1 Length=1049 Score = 291 bits (157), Expect = 2e-77 Identities = 163/166 (98%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1506 TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCATAAAATCGATTATGC 1565 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 104 TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCAGAAAATCGATTATGC 163 Query 1566 TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAG 1625 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 164 TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTATGGATTTCATATAG 223 Query 1626 TCaaaaaaaaGGGAGACGTGCTATATCCGAAACGTACGAAATATAG 1671 ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 224 TCAAAAAAAAGGGGGACGTGCTATATCCGAAACGTACGAAATATAG 269 Score = 73.1 bits (39), Expect = 6e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 37 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG 75 ||||||||||||||||||||||||||||||||||||||| Sbjct 49 GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG 87 > Ahg940863 jgi|Araly1|940863|scaffold_601407.1 Length=321 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 951 GAATGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT 991 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 54 GAACGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT 94 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62658453025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5