BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00090.1

Length=1671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936826 jgi|Araly1|936826|scaffold_501017.1                        291    2e-77
  Ahg940863 jgi|Araly1|940863|scaffold_601407.1                       71.3    2e-11


> Ahg936826 jgi|Araly1|936826|scaffold_501017.1
Length=1049

 Score =  291 bits (157),  Expect = 2e-77
 Identities = 163/166 (98%), Gaps = 0/166 (0%)
 Strand=Plus/Plus

Query  1506  TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCATAAAATCGATTATGC  1565
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  104   TAAATGCTATAAGCATAGAAAAACTTCTCGTAATGTATTTAACCAGAAAATCGATTATGC  163

Query  1566  TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAG  1625
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  164   TCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTATGGATTTCATATAG  223

Query  1626  TCaaaaaaaaGGGAGACGTGCTATATCCGAAACGTACGAAATATAG  1671
             ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  224   TCAAAAAAAAGGGGGACGTGCTATATCCGAAACGTACGAAATATAG  269


 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  37  GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG  75
           |||||||||||||||||||||||||||||||||||||||
Sbjct  49  GGAAAAAATCGTAGTTCAGATTCAAGTCGGTTCAGTGAG  87


> Ahg940863 jgi|Araly1|940863|scaffold_601407.1
Length=321

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  951  GAATGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT  991
            ||| |||||||||||||||||||||||||||||||||||||
Sbjct  54   GAACGATCTTCGCTTCGCGGGAACAACTAAAACCACCATCT  94



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62658453025


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5