BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATMG00120.1 Length=432 Score E Sequences producing significant alignments: (Bits) Value Ahg475693 jgi|Araly1|475693|fgenesh2_kg.2__823__ATMG00120.1 278 3e-74 > Ahg475693 jgi|Araly1|475693|fgenesh2_kg.2__823__ATMG00120.1 Length=253 Score = 278 bits (150), Expect = 3e-74 Identities = 159/163 (98%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 163 GGCATCGTTCGGAATAAATTTAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG 222 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 79 GGCATCGTTCGGAAGAAATTGAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG 138 Query 223 GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG 198 Query 283 ACTCTTTGTGGCCTGTGCATGCTTGAAGATGAAAGTGCCGAAC 325 |||||||||||| |||||||||||||||||||||||||| ||| Sbjct 199 ACTCTTTGTGGCATGTGCATGCTTGAAGATGAAAGTGCC-AAC 240 Score = 126 bits (68), Expect = 1e-28 Identities = 70/71 (99%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 10 CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTCttttttttCTCCCTGTTGAAGACA 69 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 10 CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTATTTTTTTTCTCCCTGTTGAAGACA 69 Query 70 GGATCGTTTGG 80 ||||||||||| Sbjct 70 GGATCGTTTGG 80 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15567480312 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5