BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATMG00120.1
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475693 jgi|Araly1|475693|fgenesh2_kg.2__823__ATMG00120.1 278 3e-74
> Ahg475693 jgi|Araly1|475693|fgenesh2_kg.2__823__ATMG00120.1
Length=253
Score = 278 bits (150), Expect = 3e-74
Identities = 159/163 (98%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 163 GGCATCGTTCGGAATAAATTTAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG 222
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 79 GGCATCGTTCGGAAGAAATTGAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG 138
Query 223 GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG 198
Query 283 ACTCTTTGTGGCCTGTGCATGCTTGAAGATGAAAGTGCCGAAC 325
|||||||||||| |||||||||||||||||||||||||| |||
Sbjct 199 ACTCTTTGTGGCATGTGCATGCTTGAAGATGAAAGTGCC-AAC 240
Score = 126 bits (68), Expect = 1e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 10 CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTCttttttttCTCCCTGTTGAAGACA 69
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 10 CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTATTTTTTTTCTCCCTGTTGAAGACA 69
Query 70 GGATCGTTTGG 80
|||||||||||
Sbjct 70 GGATCGTTTGG 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15567480312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5