BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATMG00150.1
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942929 jgi|Araly1|942929|scaffold_603473.1 575 7e-164
Ahg942472 jgi|Araly1|942472|scaffold_603016.1 575 7e-164
> Ahg942929 jgi|Araly1|942929|scaffold_603473.1
Length=397
Score = 575 bits (311), Expect = 7e-164
Identities = 326/332 (98%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 26 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 105
Query 86 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 165
Query 146 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 225
Query 206 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCT----C--AAATCAAAGC 259
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 226 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCTTATTCCCAAATCAAAGC 285
Query 260 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 345
Query 320 ATCCAGAAAGCACAGTAACAGCTATGATATAG 351
||||||||||||||||||||||||||||||||
Sbjct 346 ATCCAGAAAGCACAGTAACAGCTATGATATAG 377
> Ahg942472 jgi|Araly1|942472|scaffold_603016.1
Length=397
Score = 575 bits (311), Expect = 7e-164
Identities = 326/332 (98%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 26 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 105
Query 86 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 165
Query 146 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 225
Query 206 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCT----C--AAATCAAAGC 259
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 226 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCTTATTCCCAAATCAAAGC 285
Query 260 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 345
Query 320 ATCCAGAAAGCACAGTAACAGCTATGATATAG 351
||||||||||||||||||||||||||||||||
Sbjct 346 ATCCAGAAAGCACAGTAACAGCTATGATATAG 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12476877603
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5