BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATMG00150.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value Ahg942929 jgi|Araly1|942929|scaffold_603473.1 575 7e-164 Ahg942472 jgi|Araly1|942472|scaffold_603016.1 575 7e-164 > Ahg942929 jgi|Araly1|942929|scaffold_603473.1 Length=397 Score = 575 bits (311), Expect = 7e-164 Identities = 326/332 (98%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 26 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 85 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 105 Query 86 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 165 Query 146 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 225 Query 206 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCT----C--AAATCAAAGC 259 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 226 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCTTATTCCCAAATCAAAGC 285 Query 260 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 345 Query 320 ATCCAGAAAGCACAGTAACAGCTATGATATAG 351 |||||||||||||||||||||||||||||||| Sbjct 346 ATCCAGAAAGCACAGTAACAGCTATGATATAG 377 > Ahg942472 jgi|Araly1|942472|scaffold_603016.1 Length=397 Score = 575 bits (311), Expect = 7e-164 Identities = 326/332 (98%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 26 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 85 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46 AACTAGAAGTCAACTCAAAACCGCTAAAAGGACCTATTATTTGCCCTATTAGGACCTATT 105 Query 86 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 ATTCTAAAGTACCATTGGAGCTCCTTTTCCCGACAACAGATCGGAGATTTTACTTTCTCA 165 Query 146 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 AGTCATACGTCTTTTGTTCAGCCAACAGTGTTCCGCTCTACTTATTATTACTTACTAGCG 225 Query 206 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCT----C--AAATCAAAGC 259 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 226 CCCTTCACTTCAACTCATACATACTACTTTTTGACTTTCAGCTTATTCCCAAATCAAAGC 285 Query 260 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 TACTTGCTTATAAGAGAAGAGCAAGGTGCGTAGCTGGCTTGTTAAAAAGCATGGAAAGGT 345 Query 320 ATCCAGAAAGCACAGTAACAGCTATGATATAG 351 |||||||||||||||||||||||||||||||| Sbjct 346 ATCCAGAAAGCACAGTAACAGCTATGATATAG 377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12476877603 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5