BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00160.1

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176           883    0.0  


> Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176
Length=774

 Score =  883 bits (478),  Expect = 0.0
 Identities = 480/481 (99%), Gaps = 0/481 (0%)
 Strand=Plus/Plus

Query  219  AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC  278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC  242

Query  279  GATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGA  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGA  302

Query  339  TCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGA  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  TCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGA  362

Query  399  CTATAACAGTTCCGATGAGCAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGAAGA  458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  CTATAACAGTTCCGATGAGCAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGAAGA  422

Query  459  TCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  TCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA  482

Query  519  AACTCATCTACGTATTATTGTAACATCTGCTGATGTACCTCATAGTTGGGCTGTACCTTC  578
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  483  AACTCATCTACGTATTATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTC  542

Query  579  CTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAAATCTCTATTTTGGTACA  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  543  CTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAAATCTCTATTTTGGTACA  602

Query  639  ACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTAC  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  ACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTAC  662

Query  699  G  699
            |
Sbjct  663  G  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28897171086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5