BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00350.1

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936828 jgi|Araly1|936828|scaffold_501019.1                        119    2e-27


> Ahg936828 jgi|Araly1|936828|scaffold_501019.1
Length=611

 Score =  119 bits (64),  Expect = 2e-27
 Identities = 64/64 (100%), Gaps = 0/64 (0%)
 Strand=Plus/Minus

Query  1    CGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  198  CGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGA  139

Query  61   ATCC  64
            ||||
Sbjct  138  ATCC  135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2025709449


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5