BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00520.1

Length=2019
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891943 jgi|Araly1|891943|Al_scaffold_0007_3929                    119    9e-26


> Ahg891943 jgi|Araly1|891943|Al_scaffold_0007_3929
Length=339

 Score =  119 bits (64),  Expect = 9e-26
 Identities = 72/75 (96%), Gaps = 3/75 (4%)
 Strand=Plus/Plus

Query  1901  TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCC-A--ACAGCATAGAGCTTG  1957
             ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct  8     TTGTAAATCAAGAAGGTGGCAAGATCCTTGCAGAGTTCCCCAATTACAGCATAGAGCTTG  67

Query  1958  GGAAGCTCGGACCCG  1972
             |||||||||||||||
Sbjct  68    GGAAGCTCGGACCCG  82



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75913858285


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5