BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00540.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480247 jgi|Araly1|480247|fgenesh2_kg.3__2948__AT2G07713.1         490    3e-138


> Ahg480247 jgi|Araly1|480247|fgenesh2_kg.3__2948__AT2G07713.1
Length=339

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 274/278 (99%), Gaps = 1/278 (0%)
 Strand=Plus/Plus

Query  92   CAAAGGCCCTCAGAATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  151
            |||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   CAAAAGCCAGCA-AATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  121

Query  152  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  181

Query  212  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  241

Query  272  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  301

Query  332  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  369
            ||||||||||||||||||||||||||||||||||||||
Sbjct  302  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  339


 Score =  130 bits (70),  Expect = 7e-30
 Identities = 73/74 (99%), Gaps = 1/74 (1%)
 Strand=Plus/Plus

Query  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGG-AGTCCGGCAGTACCCGTCTC  59
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGGAAGTCCGGCAGTACCCGTCTC  60

Query  60  ATCAAAAGCCAGCA  73
           ||||||||||||||
Sbjct  61  ATCAAAAGCCAGCA  74



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5