BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATMG00560.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319380 jgi|Araly1|319380|fgenesh1_pm.C_scaffold_3002396 1895 0.0
Ahg927850 jgi|Araly1|927850|scaffold_300307.1 89.8 4e-17
> Ahg319380 jgi|Araly1|319380|fgenesh1_pm.C_scaffold_3002396
Length=1056
Score = 1895 bits (1026), Expect = 0.0
Identities = 1047/1056 (99%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 60
Query 61 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 120
Query 121 CTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGCGAATAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 180
Query 181 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 240
Query 241 aaaaaaaTGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAAAAATGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 300
Query 301 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 360
Query 361 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 420
Query 421 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 480
Query 481 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACT 540
Query 541 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 600
Query 601 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 660
Query 661 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 720
Query 721 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 780
Query 781 GGGCATAAAAAATCGAAGCCGAAGACGGATCAAGGTAACTTGCCTGCCAAGCCAATAGGC 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 GGGCATAACAAATCGAAGCCGAAGACGGATCAAGGTAACTTGCCTGCCAAGCCGATAGGC 840
Query 841 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 900
Query 901 GTCGATCGTGCACCTGTC---A-C--TTATATAATAGCCAGTCATCAATTAGAAGCAGGC 954
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 901 GTCGATCGTGCACCTGTCGTCAACACTTATATAATAGCCAGTCATCAATTAGAAGCAGGC 960
Query 955 AAAATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC 1020
Query 1015 CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGA 1050
||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGA 1056
> Ahg927850 jgi|Araly1|927850|scaffold_300307.1
Length=283
Score = 89.8 bits (48), Expect = 4e-17
Identities = 51/52 (98%), Gaps = 1/52 (2%)
Strand=Plus/Plus
Query 918 CACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGG-TGATGAA 968
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 216 CACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGATGATGAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5