BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00570.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319379 jgi|Araly1|319379|fgenesh1_pm.C_scaffold_3002395           649    0.0  


> Ahg319379 jgi|Araly1|319379|fgenesh1_pm.C_scaffold_3002395
Length=360

 Score =  649 bits (351),  Expect = 0.0
 Identities = 355/357 (99%), Gaps = 0/357 (0%)
 Strand=Plus/Plus

Query  475  ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC  60

Query  535  ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT  594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT  120

Query  595  CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA  180

Query  655  GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT  714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT  240

Query  715  TTGATAATAGAGTTGGCTATTTTTGTGGCATCGATTGTACAAGTTCGTGAAGAGGGCTGG  774
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  TTGATAATAGAGTTGGCTATTTTTGTGGCATTGATTGTACAAGTTCGTGAAGAGGGCTGG  300

Query  775  ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGaaaaaaaaTAAGAGTAGccccccc  831
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGAAAAAAAAGAAGAGTAGCCCCCCC  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5