BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATMG00580.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392 1609 0.0
> Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392
Length=1389
Score = 1609 bits (871), Expect = 0.0
Identities = 899/912 (99%), Gaps = 4/912 (0%)
Strand=Plus/Plus
Query 489 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 521
Query 549 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 581
Query 609 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 641
Query 669 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 701
Query 729 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 761
Query 789 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 821
Query 849 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTCAAGACAGATCGA 908
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 822 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGA 881
Query 909 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 941
Query 969 GTTTAGTCCGAACATACAG--GGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGA 1026
|||||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 942 GTTTAGTCGGG-CGG-CGGCCGGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGA 999
Query 1027 CTGGTTCCTTCAGCCCTTTTTCTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CTGGTTCCTTCAGCCCTTTTTCTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGA 1059
Query 1087 CTTGTTAGATATTACGGAGGTTTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTTGTTAGATATTACGGAGGTTTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTT 1119
Query 1147 TCTTTTACTTTGGCCAATATGAGTTCACCTGGTACTAGCAGCTTTATCGGGGAATTTCTC 1206
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1120 TCTTTTACTTTGGCCAATATGAGTTTACCTGGTACTAGCAGCTTTATCGGGGAATTTCTC 1179
Query 1207 ATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATG 1239
Query 1267 ATTTTAGGTGCGGCCTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ATTTTAGGTGCGGCCTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAA 1299
Query 1327 CCTGATTTCCTCCATAAATTCTCCGATTCAAATGGCAGAGAAGTTTCCATATTTATACCT 1386
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1300 CCCGATTTCCTCCATAAATTCTCCGATTTAAATGGCAGAGAAGTTTCCATATTTATACCT 1359
Query 1387 TTTCTTGTTGGA 1398
||||||||||||
Sbjct 1360 TTTCTTGTTGGA 1371
Score = 852 bits (461), Expect = 0.0
Identities = 461/461 (100%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60
Query 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120
Query 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180
Query 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240
Query 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300
Query 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360
Query 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420
Query 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5