BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00640.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942548 jgi|Araly1|942548|scaffold_603092.1                       1020    0.0  
  Ahg952661 jgi|Araly1|952661|scaffold_900012.1                       1005    0.0  


> Ahg942548 jgi|Araly1|942548|scaffold_603092.1
Length=639

 Score = 1020 bits (552),  Expect = 0.0
 Identities = 571/580 (98%), Gaps = 2/580 (0%)
 Strand=Plus/Plus

Query  1    ATGAGATTGAGTAT-TACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATC  59
            |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  21   ATGAGATTGAGT-TCGACGAATATGGATGCTAGAAAGATGTTATTTGCTGCTATTCTATC  79

Query  60   TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  139

Query  120  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  199

Query  180  TCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  239
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  TCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  259

Query  240  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  319

Query  300  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  379

Query  360  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  380  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  439

Query  420  TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  479
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  440  TTCCCGTCGCATCCGTTTTCAGGACGATCGAGTCACAAAGTTTTACACCTTAGTGGGGAA  499

Query  480  GCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  539
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  500  TCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  559

Query  540  GGTGGTCTTAAGAATGGTTCgggggggggTTTTCTCTTAA  579
            ||||||||||||||||||||||||||||| ||||||||||
Sbjct  560  GGTGGTCTTAAGAATGGTTCGGGGGGGGGGTTTCTCTTAA  599


> Ahg952661 jgi|Araly1|952661|scaffold_900012.1
Length=2242

 Score = 1005 bits (544),  Expect = 0.0
 Identities = 561/569 (99%), Gaps = 2/569 (0%)
 Strand=Plus/Plus

Query  1     ATGAGATTGAGTAT-TACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATC  59
             |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1620  ATGAGATTGAGT-TCGACGAATATGGATGCTAGAAAGATGTTATTTGCTGCTATTCTATC  1678

Query  60    TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1679  TATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCT  1738

Query  120   TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  179
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1739  TTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGAC  1798

Query  180   TCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  239
             ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1799  TCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGA  1858

Query  240   AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  299
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1859  AGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTG  1918

Query  300   TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGT  359
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1919  TGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACATT  1978

Query  360   GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1979  GCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTC  2038

Query  420   TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  479
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2039  TTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAA  2098

Query  480   GCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  539
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2099  TCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTT  2158

Query  540   GGTGGTCTTAAGAATGGTTCggggggggg  568
             |||||||||||||||||||||||||||||
Sbjct  2159  GGTGGTCTTAAGAATGGTTCGGGGGGGGG  2187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5