BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00650.1

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952661 jgi|Araly1|952661|scaffold_900012.1                        560    2e-159
  Ahg942549 jgi|Araly1|942549|scaffold_603093.1                        560    2e-159


> Ahg952661 jgi|Araly1|952661|scaffold_900012.1
Length=2242

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 303/303 (100%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  1     ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1047  ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  1106

Query  61    ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1107  ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  1166

Query  121   GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1167  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  1226

Query  181   TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1227  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  1286

Query  241   GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  1346

Query  301   TAA  303
             |||
Sbjct  1347  TAA  1349


> Ahg942549 jgi|Araly1|942549|scaffold_603093.1
Length=585

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 303/303 (100%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  263  ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGA  322

Query  61   ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  323  ATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTA  382

Query  121  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  383  GCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTA  442

Query  181  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  TTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTC  502

Query  241  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  503  GTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGT  562

Query  301  TAA  303
            |||
Sbjct  563  TAA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10645409331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5