BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00660.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489701 jgi|Araly1|489701|fgenesh2_kg.6__2835__ATMG00660.1         466    6e-131
  Ahg952661 jgi|Araly1|952661|scaffold_900012.1                        296    9e-80 


> Ahg489701 jgi|Araly1|489701|fgenesh2_kg.6__2835__ATMG00660.1
Length=414

 Score =  466 bits (252),  Expect = 6e-131
 Identities = 275/285 (96%), Gaps = 5/285 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGCCTTTTGGCGAAGCCAAGTTTCTTTCGGGCCACCAAACCCTGCAACTGATGAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGGCCTTTTGGCGAAGCCAAGTTTCTTTCGGGCCACCAAACCCTGCAACTGATGAGA  60

Query  61   AAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTA---CG--TTGTCACACTCCCTGCCTTC  115
            ||||||||||||||| |||||||||||||||||    |  ||||||||||||||||||||
Sbjct  61   AAGAAGGCCCTATGGGGTAAAGGGAAGCGTGTATGTTGTCTTGTCACACTCCCTGCCTTC  120

Query  116  CAAAGGTGCCTAGAGGACGGGCCAGACGCAGCGGAGCGACAACCCGGGAGCAGAGTCCCC  175
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct  121  CAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACAACCCGGGAGCAGATTCCCC  180

Query  176  ACCGGCAGGGGGACAGGAGACGGCCATCTCAAGGCACATCACGACCTACAGGTAAGACCG  235
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  ACCGGCAGGGGGACAGGAGACGGCCATCTCAAAGCACATCACGACCTACAGGTAAGACCG  240

Query  236  GCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATA  280
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATA  285


 Score =  224 bits (121),  Expect = 4e-58
 Identities = 128/131 (98%), Gaps = 2/131 (2%)
 Strand=Plus/Plus

Query  320  AAAGCGGAGGGAAGGGATCTCTTTTCTGCAACGaaaaaaaaaaaCGGAGCAGATTTGACT  379
            |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct  286  AAAGCGGAGGGAAGGGATCTCTTTTCTGCAACG--GAAAAAAAACGGAGCAGATTTGACT  343

Query  380  CGGCACAACCTAACGATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGAT  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  CGGCACAACCTAACGATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGAT  403

Query  440  CTCTGTTCTAA  450
            |||||||||||
Sbjct  404  CTCTGTTCTAA  414


> Ahg952661 jgi|Araly1|952661|scaffold_900012.1
Length=2242

 Score =  296 bits (160),  Expect = 9e-80
 Identities = 171/176 (97%), Gaps = 2/176 (1%)
 Strand=Plus/Plus

Query  275  TCCATAGTACCTGCAGCCCCACGGACTTCATATTCCTCATTTTAGAAAGCGGAGGGAAGG  334
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    TCCATAGTACCTGCAGCCCCACGGACTTAATATTCCTCATTTTAGAAAGCGGAGGGAAGG  60

Query  335  GATCTCTTTTCTGCAACGaaaaaaaaaaaCGGAGCAGATTTGACTCGGCACAACCTAACG  394
            |||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||
Sbjct  61   GATCTCTTTTCTGCAACGGAAAAAAAA--CGGAGCAGATTTGATTCGGCACAACCTAACG  118

Query  395  ATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGATCTCTGTTCTAA  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  ATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGATCTCTGTTCTAA  174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5