BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00760.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484736 jgi|Araly1|484736|fgenesh2_kg.5__728__ATMG00760.1          601    1e-171


> Ahg484736 jgi|Araly1|484736|fgenesh2_kg.5__728__ATMG00760.1
Length=328

 Score =  601 bits (325),  Expect = 1e-171
 Identities = 327/328 (99%), Gaps = 0/328 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCTTAGAAGTGGAAAAGAGCTTGAGGAAGTTGTGAGAGATGATAAGGAAGAGGAGCAA  60

Query  61   GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCCTTGCTTGGCATGCTCTCATCA  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GTTGTTGTGAGAAAGGCTAAACAGATCGTCAACTTTCCGTTGCTTGGCATGCTCTCATCA  120

Query  121  GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCAAGGTATGGCTTAAGGCGCTGGCCATTCACCGTGAAGTGTTCACCATTGACATCCCAA  180

Query  181  AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGCACTACCGCTCCATACGGTTTCACTTCCTTTATGCGAAAGGGTAAAAAACATCTAGAT  240

Query  241  CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTCAACTTTCCTGGAAATAACTTGAGTCTAGAGTTGAGGAGCAGCACTTGGTCATTTACC  300

Query  301  TTGAACTCCCTTGGTAAGATCTTCTTAT  328
            ||||||||||||||||||||||||||||
Sbjct  301  TTGAACTCCCTTGGTAAGATCTTCTTAT  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5