BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00770.1

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484734 jgi|Araly1|484734|fgenesh2_kg.5__726__ATMG00770.1          403    3e-112


> Ahg484734 jgi|Araly1|484734|fgenesh2_kg.5__726__ATMG00770.1
Length=234

 Score =  403 bits (218),  Expect = 3e-112
 Identities = 229/234 (98%), Gaps = 1/234 (0%)
 Strand=Plus/Plus

Query  71   CCATGGAGGGTTCTCTTAAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG  130
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CCATGGAGGGTTCTCTTGAGTCTTATCCTTTTCCTTCCAATATCAATATTACTAGTTGTG  60

Query  131  TCT-CCATTAAACTCAACGATCGGAACTATCTTTTATACGACGAAGGAAGGGTGCGATTG  189
            ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  61   TCTCCCATTAAACTCAACGATCGGAACTATCTTCTATACGACGAAGGAAGGGTGCGATTG  120

Query  190  AGTCTGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTTTCCTTTCAGTCGAGTTATTT  249
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  AGTCCGCTGAACTTGGGCGAGAGATGTGACTTCGTTCCTCTCCTTTCAGTCGAGTTATTT  180

Query  250  AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAACCTCTCCAGAGCTCTGGTGTCTACGAGAAGCTTCATGAGTCAAACAATTGA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10645409331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5