BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00890.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319392 jgi|Araly1|319392|fgenesh1_pm.C_scaffold_3002408           588    9e-168


> Ahg319392 jgi|Araly1|319392|fgenesh1_pm.C_scaffold_3002408
Length=321

 Score =  588 bits (318),  Expect = 9e-168
 Identities = 320/321 (99%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGCACTTGGAACGTTCAGTTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCACTTGGAACGTTCAGTTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCT  60

Query  61   TATAGCTTATGGGGCATTTCACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATAGCTTATGGGGCATTTCACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACA  120

Query  121  GGAAAGAAAAGGTCCAAAGGATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAAAGAAAAGGTCCAAAGGATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAG  180

Query  181  AGTCGAAATGACCTTGGTCCAACCATAGTAGGACTGATTCGGAAGATTCTATCCTATTCT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  AGTCGAAATGACCTTGGTCCAACCATAGTAGGACTGATTCGTAAGATTCTATCCTATTCT  240

Query  241  TCTAAAAAGGAGTTCTCTAATTTAACTGGACTTGAAAGCGGTGGATCAAGCCCCCCTTTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCTAAAAAGGAGTTCTCTAATTTAACTGGACTTGAAAGCGGTGGATCAAGCCCCCCTTTT  300

Query  301  TCTTTGGCTGTGTCCAAGTGA  321
            |||||||||||||||||||||
Sbjct  301  TCTTTGGCTGTGTCCAAGTGA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5