BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00900.1

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480266 jgi|Araly1|480266|fgenesh2_kg.3__2967__ATMG00900.1        1415    0.0  


> Ahg480266 jgi|Araly1|480266|fgenesh2_kg.3__2967__ATMG00900.1
Length=769

 Score = 1415 bits (766),  Expect = 0.0
 Identities = 768/769 (99%), Gaps = 0/769 (0%)
 Strand=Plus/Plus

Query  1    ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA  60

Query  61   ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA  120

Query  121  GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG  180

Query  181  GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA  240

Query  241  ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCttttttt  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCTTTTTTT  300

Query  301  ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG  360

Query  361  GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG  420

Query  421  CGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT  480
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT  480

Query  481  ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT  540

Query  541  AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT  600

Query  601  AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT  660

Query  661  TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT  720

Query  721  TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT  769
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT  769



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28439696082


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5