BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00960.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931002 jgi|Araly1|931002|scaffold_303459.1                       1092    0.0  


> Ahg931002 jgi|Araly1|931002|scaffold_303459.1
Length=733

 Score = 1092 bits (591),  Expect = 0.0
 Identities = 591/591 (100%), Gaps = 0/591 (0%)
 Strand=Plus/Plus

Query  22   GCGAAGCGTGTCGTTCGTAATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACC  81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  GCGAAGCGTGTCGTTCGTAATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACC  182

Query  82   GCCGGCGCGAACACAGTGGTCTCTGATCAGGACCAGGAACCAATTCGAATTTGGATCTTG  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  GCCGGCGCGAACACAGTGGTCTCTGATCAGGACCAGGAACCAATTCGAATTTGGATCTTG  242

Query  142  ACATGTTGGTGGTTTTTAACCGTAGGCATCTTGCCAGGAAGTTGGTGGGCTTATCATGAA  201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  ACATGTTGGTGGTTTTTAACCGTAGGCATCTTGCCAGGAAGTTGGTGGGCTTATCATGAA  302

Query  202  TTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCTTCTTTTATGCCTCGG  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  TTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCTTCTTTTATGCCTCGG  362

Query  262  GTATTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCG  321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  GTATTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCG  422

Query  322  TTTCTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGA  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  TTTCTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGA  482

Query  382  TTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGG  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483  TTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGG  542

Query  442  TTCTTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  543  TTCTTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCA  602

Query  502  TCGGTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTA  561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  TCGGTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTA  662

Query  562  CGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  612
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663  CGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5