BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00980.1

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930999 jgi|Araly1|930999|scaffold_303456.1                        682    0.0  


> Ahg930999 jgi|Araly1|930999|scaffold_303456.1
Length=419

 Score =  682 bits (369),  Expect = 0.0
 Identities = 375/378 (99%), Gaps = 0/378 (0%)
 Strand=Plus/Plus

Query  1    ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT  81

Query  61   ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA  141

Query  121  ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA  201

Query  181  CATGATATATTTGCTCACATCCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG  240
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  202  CATGATATATTTGCTTACATTCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG  261

Query  241  TTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA  300
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  262  TTAATAAGAGGAGGTAGAGTTAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA  321

Query  301  GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA  381

Query  361  AAACCCAAATCGATATGA  378
            ||||||||||||||||||
Sbjct  382  AAACCCAAATCGATATGA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13507078506


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5